Add reextract pipeline (scripts/reextract/) that rebuilds doc-level entity
JSON from Sonnet-vision chunks via Opus, replacing the noisy per-page
extraction. Add synthesize scripts to regenerate wiki/entities from the 116
_reextract.json (30), aggregate missing page.md from chunks (31), and reprocess
805 pages the doc-rebuilder agent dropped on context overflow (32). Add
maintain scripts 43-56 for chunk-page sync, dedup, generic-entity marking, and
typed relation extraction.
Web: wire relations API + entity-relations component; entity/timeline/doc
pages consume the rebuilt layer.
Note: raw/, processing/, wiki/ remain gitignored (bulk data managed
separately); the 116 reextract JSONs and 7,798 rebuilt entity files live on
disk only. The 27 curated anchor events under wiki/entities/events/ are
preserved.
Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
Two bugs combined to make the chat reply with only cards and no prose:
1. SQL trigger rollup_session_stats was failing with "column reference
total_cost_usd is ambiguous" because the UPDATE on public.profiles had
a FROM public.chat_sessions clause and both tables expose that column.
Persistence of every user message died at this point — sessions were
created in the DB but had message_count=0 forever. Applied SQL fix
that qualifies columns with p./s. aliases (production DB updated;
ALTER FUNCTION run live, not yet codified in a migration file).
2. The free-tier model (nemotron-3-super:free) spent all 5 tool-loop
turns on hybrid_search calls and never wrote any prose, returning
content_len=0. Added a forced-synthesis pass in openrouter.ts: when
the loop exits with empty assembledText but the model did call tools,
we send ONE final turn with tools omitted from the request payload
and a user message instructing the model to answer in 3-8 sentences
citing chunks. openrouterStreamCall now accepts a `withTools` opt
so the synthesis call can disable tool calling entirely.
Verified end-to-end with the actual user query "O que os astronautas
viram? Quem foi que viu?" on /d/nasa-uap-d6-apollo-17-...:
- content_len: 0 → 947 chars (real synthesis citing Schmitt)
- artifacts: 44 preserved
- assistant message persisted with tool_calls + citations columns
34 of 116 docs were generated with 0-based PNG numbering (p-000.png …
p-008.png) but the Sonnet chunks reference 1-based page numbers in their
YAML frontmatter (page: 9 means the 9th sheet of paper). The /api/crop
handler built p-009.png and got a 500, the browser's Next/Image surfaced
400, and the chunk rendered as a black box on screen.
Fixes:
- web/app/api/crop/route.ts: try p-NNN.png first, fall back to
p-(NNN-1).png if the 1-based file is missing. Cheap insurance for any
doc that comes in with the old convention.
- scripts/01-convert-pdfs.sh: previously printf '%03d' "$num" with $num
starting at 0 (e.g. "008") raised "invalid number" because Bash
parsed it as octal. Wrap with $((10#$num)) to force decimal — this
was silently corrupting page sequences and producing gaps like p-001
... p-008, p-011 (missing p-009/p-010).
- All 34 affected docs re-converted from PDFs with the patched script;
every directory now has continuous 1-based PNGs.
- /processing/png/ rsync'd to VPS, web redeployed.
Smoke: /api/crop?doc=doc-341-…&page=9&… now returns 200 image/webp
instead of 500. Tested in browser: chunk c0026 (diagram, p9) renders
the real engineering diagram.
Fase 3 onda 2 — entity synthesis at scale:
- scripts/synthesize/20_entity_summary.py: queries DB for entities with
total_mentions ≥ threshold + top-K verbatim chunk snippets via
entity_mentions JOIN, prompts Sonnet (Holmes-Watson voice, bilingual),
writes narrative_summary EN+PT-BR + summary_status=synthesized.
Ran on 187 candidates (mentions ≥ 20) → 158 OK · 1 err · 29 skipped (no
snippets). Combined with anchor curation: 20 curated + 158 synthesized
= 178 entities with real narrative (vs 0 a day ago).
Fase 4 — chat with typed artifacts + persistence:
- lib/chat/agui.ts: AG-UI v1 typed Artifact union (citation, crop_image,
entity_card, evidence_card, hypothesis_card, case_card, navigation_offer)
alongside the existing event types.
- lib/chat/tools.ts + openrouter.ts: hybrid_search emits up to 6
citation + crop_image artifacts per query. Provider collects them and
returns in done.artifacts so the route can persist.
- api/sessions/[id]/messages: persist artifacts to messages.citations.
- components/chat-bubble.tsx: ArtifactCard renders inline cards (citation,
crop_image, entity_card, navigation_offer) for streamed and persisted
messages. activeId now persisted in localStorage so navigation between
pages keeps the same conversation. New sessions are lazy (only when user
has zero). loadMessages hydrates tools + artifacts from server. CRUD UI:
rename (✎) + archive (🗑) buttons per session in the list.
Home search:
- doc-list-filters: input now fires hybrid_search (rerank=0 for speed)
in parallel with the local title filter; chunk hits render above the doc
grid with snippet + score + classification.
- api/search/hybrid: accept ?rerank=0 to skip the cross-encoder (1.3s vs 60s).
Auth flow:
- infra: SMTP_HOST=mail.spacemail.com:587 + DMARC published; mail now lands
in inbox. GOTRUE_MAILER_AUTOCONFIRM=false (real email verification).
- kong.yml: proxy /auth/callback on api.disclosure.top → web:3000 so PKCE
email links don't 404 at the gateway.
- web/app/auth/callback: handle both ?code= (OAuth) and ?token=&type=
(PKCE); redirect to the public site host before verifyOtp so the session
cookie lands on the right domain.
Audit deliverables:
- .nirvana/outputs/disclosure-bureau/.../systems-atelier/: 5 docs (code
analysis, tech debt, discovery brief, system arch, 5 ADRs) authored by
sa-principal that produced this roadmap. Kept in-tree for traceability.
- scripts/03-dedup-entities.py: stop emitting placeholder narrative ("Stub. Will
be enriched in Phase 7"); write summary_status=none + null fields instead.
- scripts/maintain/41_strip_stubs.py: idempotent migration that cleaned the
22,096 entity .md files (now zero stub strings in wiki/).
- scripts/synthesize/01_anchor_events.py: curated 20 anchor UAP events
(Roswell, Nimitz Tic-Tac, Phoenix Lights, Operação Prato, AATIP, etc.) with
bilingual Holmes-Watson narrative via claude -p --model sonnet
(CLAUDE_CODE_OAUTH_TOKEN). All summary_status=curated, confidence=high.
- web/api/timeline + timeline-view: filter narrative-less events by default,
render "curado" badge for hand-vetted ones, drop the date display alone.
- CLAUDE-schema-full.md: document the summary_status enum and the four states.
- docker-compose.yml: SMTP_HOST=mail.spacemail.com configured;
GOTRUE_MAILER_AUTOCONFIRM flipped to false (real email confirmation working).
- .nirvana/outputs/.../systems-atelier/: 5 deliverables of the architecture
audit that produced this roadmap.
